Applied Bioinformatics Course [中文]

PKU 2012 Fall Class (18 January 2013)

• PKU12F01 - Research on the Interaction Between GH3 Protein Family and AIEP.
• PKU12F02 - Analysis of gene AT5G36930, a member of TIR-NBS-LRR class.
• PKU12F03 - bioinformatic analysis of arabidopsis transcription factor MYB98.
• PKU12F04 - Pine AP2
• PKU12F05 - Sequence analysis of protein MB21D1.
• PKU12F06 - Apaf1
• PKU12F07 - Markov
• PKU12F08 - Targeted Gene Disruption in Zebrafish Using Engineered TALENs.
• PKU12F09 - PTEN
• PKU12F10 - Genome-wide identification of RNA editing events and conservative analysis in rhesus monkey on the basis of the next-generation sequencing technology.
• PKU12F11 - Key signal molecules YAP in Hippo Pathway
• PKU12F12 - TRIM72: Structure, Evolution and Function.
• PKU12F13 - PyMol guide and application.
• PKU12F14 - AutoDock guide and application.
• PKU12F15 - New method to study genetic recombination: whole genome sequencing of single sperm or oocyte cells.
• PKU12F16 - Ubiquitin and ubiquitin-like proteins.
• PKU12F17 - Phylogentic tree construction using MEGA using bacterial 16s rRNA as an example.
• PKU12F18 - Get to know the roles of modified nucleosides in RNA 3D structure.

CAAS 2012 Fall M.S. Class (20 January 2013)

• CAAS12F2-01 - Cucumber
• CAAS12F2-02 - Study on the molecular mechanism of the B and Q Bemisia tabaci's susceptibility difference to insecticides.
• CAAS12F2-03 - CER1
• CAAS12F2-04 - WebLab
• CAAS12F2-05 - AtCER9
• CAAS12F2-06 - Mechanism of opaque 2 and its mutant in maize.
• CAAS12F2-07 - K3Y762
• CAAS12F2-08 - Swiss-PDBViewer
• CAAS12F2-09 - Structural and functional analysis of salivary protein DSR33 of Sitobion avenae.
• CAAS12F2-10 - irrE
• CAAS12F2-11 - alpha-amylase
• CAAS12F2-12 - GRMZM2G090264
• CAAS12F2-13 - alpha-toxin
• CAAS12F2-14 - UL2

CAAS 2012 Fall PhD Class (11 January 2013)

• CAAS12F1-01 - The analysis of eIF3G in Setaria italica.
• CAAS12F1-02 - The Bioinformatic Analysis of Dwarf14 In Rice.
• CAAS12F1-03 - Identification of interaction between ERF transcription factor W17 and candidate proteins.
• CAAS12F1-04 - The Comparation of between GGPS Genes from Solanum lycopersicumand S. habrochaites.
• CAAS12F1-05 - Bioinformatics Analysis of Alkaline Phosphatase (ALP)-The Brown Planthopper Bt Receptor.
• CAAS12F1-06 - The role of heat-shock proteins of the B-biotype Bemisia tabaci in adapting tempetature changes.
• CAAS12F1-07 - Analysis of miRNAs involved in seed development of wheat by high-throughput sequencing.
• CAAS12F1-08 - Candidate gene analysis of QTL qTGW6.1 for 1000-grains weight on the short arm of rice chromosome 6.
• CAAS12F1-09 - Prediction of P53 target genes related to antiviral innate immunity agaonst JEV infection.
• CAAS12F1-10 - The role of PCSK9 protein in atherosclerosis.
• CAAS12F1-11 - Bioinformation analysis of PAD2 related to aerial peg abortion in peanut.
• CAAS12F1-12 - Bioinformatics Analysis of DMRE7 Gene in Cattle-yak.
• CAAS12F1-13 - Research on Organophosphorus Hydrolase.

CAAS 2012 Spring Class (10 June 2012)

• CAAS12S01 - The function of H5N1NS1 protein.
• CAAS12S02 - Prediction of Phospholation sites of P protein of Newcastle disease virus.
• CAAS12S03 - How to use the Swiss-PDB Viewer.
• CAAS12S04 - Analysis of RHDV genome sequence and structural and functional prediction of VP60.
• CAAS12S05 - The potential anti-influenza A virus effects of hGBP1.
• CAAS12S06 - PRRS virus Nsp2 amino acid sequence & function analysis.
• CAAS12S07 - Structure prediction of Streptomyces phage phiC31 GP3.
• CAAS12S08 - Sequence analysis of Pekin-ducks alpha-inteferon.
• CAAS12S09 - Analysis of bovine integrin alphaV-beta3.
• CAAS12S10 - Bioinformatic Analysis of F Protein in PPRV.
• CAAS12S11 - Structural analysis and functional prediction of suspect Mus musculus integrin.
• CAAS12S12 - Protein Prediction and Structure Analysis of N-terminal of E3L Protein in SPPV.
• CAAS12S13 - Brief-instruction of PyMOL.
• CAAS12S14 - Analysis of myosin MHCIIb.
• CAAS12S15 - Structure and function analysis of TRIM5.
• CAAS12S16 - Analysis of PPSRV NSP1 PCP-beta.
• CAAS12S17 - Analysis of Mycobacterium tuberculosis RV1636.
• CAAS12S18 - Introduction to primer design.
• CAAS12S19 - Bioinformatics analysis and epitope prediction of EIAV gp90.
• CAAS12S20 - Prediction about the function of PEDV-Plpro in innate immunity.

PKU 2012 Spring Class (8/11 June 2012)

• PKU12S01 - Sequence and Structure Analysis of MAGE Protein Family.
• PKU12S02 - Structure Prediction of AGGF1.
• PKU12S03 - A Brief Introduction to Phylogenetics.
• PKU12S04 - Sequence Analysis and Structure Prediction of TLR8.
• PKU12S05 - The Arabidopsis Information Resource (TAIR).
• PKU12S06 - Analysis of Differentially Expressed Proteins in Transgenic Cotton.
• PKU12S07 - A trial of Bioinformatic analysis in Serotonin Receptor gene family.
• PKU12S08 - Bioinformatics analysis of human interferon regulatory factor 3.
• PKU12S09 - Introduction to Swiss-PDBViewer.
• PKU12S10 - To predict new TALe-DNA code by SPDVB.
• PKU12S11 - microRNA Targets.
• PKU12S13 - A brief introduction to PyMol.
• PKU12S14 - The Globalized Protein Data Bank.
• PKU12S15 - Data analysis of quantitative differential proteomics.
• PKU12S16 - Bioinformatic analysis of Ran.

CAAS 2012 Winter Class (22 Feb 2012)

• CAAS12W01 - The structure prediction of SAPK9 and its function in ABA-signaling pathway leading to gene expression in Oryza sativa.
• CAAS12W02 - Analyses of arabidopsis folylpolyglutamate synthase (AtDFB)
• CAAS12W03 - Structural and functional anaylses of rice late embryogenesis abundant (LEA) protein.
• CAAS12W04 - The Related Research of a Chlorophyll-Deficient Mutant in Chlorophyll Biosynthesis.
• CAAS12W05 - Prediction of OBP-1 protein and analysis of its function.
• CAAS12W06 - Functional analysis and protein structure prediction of gene 6-SFT in Triticum aestivum.
• CAAS12W07 - Analysis of elogase of very long chain fatty acids.
• CAAS12W08 - Analysis of 5-Enolpyruvylshikimate-3-phosphate synthetase.
• CAAS12W10 - The Pib gene for rice blast resistance.
• CAAS12W11 - Analysis of The cadherin-like protein (CAD) genes from Plutella xylostella (L.)
• CAAS12W12 - Prediction and Structure Analysis of WRKY Transcription Factors Involved in Response to Cold in Cucumsis Sativus
• CAAS12W13 - The Initial Analysis of Polyphenol Oxidases in Wheat( T. aestivum)
• CAAS12W14 - Bioinformatical Analysis of SCR gene in Brassicaceae species
• CAAS12W15 - The analysis of and prediction of the structure of Phytoene synthase in Daucus carrot
• CAAS12W16 - Structural analyses of Inhibitor of apoptosis protein (IAP).
• CAAS12W17 - PevD1
• CAAS12W18 - Bioinformatic Analysis of associated Protein HMGCR in cow.

All the PDF file of the above lectures can be downloaded freely for teaching. The copyright belongs to the original authors.