DNA sequence analysis
Analysis of DNA sequences with several bioinformatics tools.
Gene structure analysis and prediction
- Retrive coding sequences, mRNAs and coded proteins sequences of human
alpha gene cluster
J00153
- Draw the gene structure of the Drosophila melanogaster homologue of
human Down syndrome cell adhesion molecular (DSCAM)
AF260250
- Predict the potential genes from the the second fragment of fugu cosmid sequence
AF164138_F2
- Draw the exon/intron structure of the Arabidopsis SBP gene
AT2G47070
with the gene struture dispaly system
GSDS
and compare the results with that of NCBI Gene database and TAIR annotation.
Sequence composition
- Find GC content of 2 pairs of rice sequence fragment, draw a plot
Rice Pair1
and
Rice Pair2
- Find the CpG island of the fugu cosmid sequence
AF164138
- Calculate the Codon usage of the coding sequence of fugu MDR3
Fugu MDR3 CDS
Secondary structure
- Predict the tandem repeat of the human herpesvirus 7 gene locus
HH7TETRA
- Predict the secondary structure of human mitochondria tRNA-Leu
AB026838