SpliceView Output for fragment 4 (30001-39951)

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Acceptor sites

Donor sites

ID   FRAG4               
XX
OS   Homo sapiens
XX
CC   direct strand
XX
SQ    9951 bp
XX
CC   Potential splice signals:
 
DONOR SITES:
POSITION        EXON INTRON    SCORE
      50         AGT GTGAGA      80.
     291         ATG GTACCT      74.
     366         GTG GTGAGA      85.
     581         GCA GTGAGG      78.
     646         TCG GTGTGT      79.
     648         GGT GTGTGT      75.
     828         ATG GTATTC      72.
    1224         CCG GTACAG      74.
    1780         CCT GTGGGT      77.
    2030         GCC GTGAGC      76.
    2131         CAG GTAAAC      84.
    2191         TTT GTGGGT      75.
    2317         ACT GTAAGT      80.
    2419         AAG GTATAT      80.
    2558         AAG GTGTTT      80.
    2624         CAG GTGAGC      92.
    2756         CTA GTGTGT      77.
    2760         TGT GTAAGT      81.
    2764         TAA GTGTGT      78.
    2837         CAG GTGCCT      83.
    2856         AGA GTGTGT      77.
    3190         GGG GTATTT      74.
    3310         CAG GTAATT      83.
    3506         CTG GTATAT      77.
    3519         GAT GTGTGT      75.
    3565         CTG GTACAG      76.
    3654         AAG GTACAC      78.
    3698         CAG GTACCT      78.
    3757         ACG GTAGCA      72.
    4001         AGG GTAAAC      81.
    4048         CGT GTAGGT      76.
    4071         CAG GTGCTC      78.
    4426         AAA GTGAGC      85.
    4774         TGG GTAATA      74.
    5654         CTT GTATGT      75.
    5678         TGC GTGTGT      72.
    5896         CAG GTGACA      83.
    6006         GGA GTGAGC      78.
    6100         GAG GTAATA      82.
    6221         CAG GTAAGA      91.
    6292         TCA GTGCGT      74.
    6325         TTT GTGTGT      74.
    6574         CCA GTGAGA      81.
    6603         AAG GTGCGA      87.
    6788         CTG GTAATC      75.
    6837         CAG GTGGGA      84.
    6911         AAG GTAAAG      85.
    7031         CTG GTAGAA      76.
    7066         AAC GTGTGT      81.
    7068         CGT GTGTGT      78.
    7794         GAG GTAAAG      79.
    7984         AGA GTGGGT      79.
    7988         TGG GTGAGC      85.
    8013         TTG GTGAGA      82.
    8187         TGG GTACAG      73.
    8212         CTG GTACTT      79.
    8474         CAG GTGCAT      79.
    8664         CCG GTATAT      75.
    9357         TTG GTCAGG      76.
 
ACCEPTOR SITES:
POSITION        INTRON EXON    SCORE
     136     TGTTTTGAG ATGC      77.
     262     CTAACACAG ATAG      78.
     313     GATTCCCAG GCAT      86.
     345     TAAATCCAG AAGT      84.
     365     TGTCTGCAG TGGT      81.
     568     TGCCTGTAG ACAG      81.
     572     TGTAGACAG ATGG      77.
     620     ACTGTGCAG CGTC      77.
     662     GTGATCCAG ACCT      78.
     670     GACCTTCAG TTTT      77.
     709     ATTTTGCAG CATT      79.
     756     GGCCAACAG CATG      83.
     910     TGTATCCAG GACG      82.
     936     ATTTTACAG AAGT      77.
    1117     TTTGTATAG TTTA      78.
    1158     CCACTGCAG GAAA      78.
    1183     TATTTGCAG AGCT      82.
    1196     ATCTCGCAG AGTC      79.
    1410     CCTTCGCAG CTGT      82.
    2001     GTCCACCAG GGGG      77.
    2103     TTTGTATAG AAAA      80.
    2132     TGTTAACAG GTAA      82.
    2245     TTTCTCCAG TTTT      89.
    2372     TTCTCTTAG AGGT      86.
    2374     CTCTTAGAG GTCT      81.
    2625     GACCTCCAG GTGA      78.
    2838     GCCTGCCAG GTGC      82.
    2899     TCGCCTTAG GATT      77.
    2906     AGGATTCAG ACAA      77.
    2923     TCCCCCAAG AGAG      77.
    2998     GGCTCCAAG ATAC      78.
    3289     TTCTTTAAG GATC      85.
    3297     GGATCTCAG TTGT      77.
    3311     GTTCTTCAG GTAA      88.
    3347     ATTTGTTAG AGAA      77.
    3478     TTTTGAAAG TGAA      80.
    3592     TTTCCACAG CTTA      87.
    3632     TACCTTCAG AGAA      85.
    3829     TGCATTCAG CAAC      78.
    3919     CGCCAACAG ATAA      84.
    3979     CCCACACAG AGCC      78.
    4053     TTCGTGTAG GTTG      80.
    4061     GGTTGGCAG GATC      78.
    4091     TGCTCTCAG AGAA      84.
    4093     CTCTCAGAG AAGT      77.
    4208     CCCCCCAAG ATGC      88.
    4689     TATTCTCAG TAAA      77.
    4750     CCTGTTTAG GAAC      79.
    5072     ACACTTTAG AATT      77.
    5164     TGTTTGTAG TTTA      77.
    5217     CACTCTTAG CACC      79.
    5274     AGCTTTCAG TCAG      83.
    5315     GCGGTTCAG ATCG      78.
    5358     TTAATACAG GCGT      84.
    5609     CGCATGAAG AGGA      79.
    5664     GTATGTCAG ACTG      80.
    5744     CACATTCAG GATG      79.
    5782     CCCTCCCAG CGAA      90.
    5873     CATTTTCAG GGTT      89.
    5897     CATGTCCAG GTGA      80.
    6070     CCTTATCAG GCTC      80.
    6079     GCTCCATAG ATGG      78.
    6099     CAGTTGTAG AGGT      77.
    6149     CTTCTCCAG GAAC      82.
    6176     GAGATCCAG GGCG      80.
    6261     GCCCCCCAG ACGG      81.
    6315     CAAATCCAG GAGA      78.
    6440     CGCCCCCAG CACC      79.
    6515     GTCCTTCAG GCTG      82.
    6569     CTGCGGCAG GAAC      81.
    6604     TCATGGAAG GTGC      81.
    6683     TGGCCGCAG ACCG      83.
    6800     AATCTGTAG AGCT      78.
    6820     CCGTTGCAG GGTC      83.
    6838     TCTGCTCAG GTGG      82.
    6899     TACCTACAG AAAG      77.
    6944     CCAACACAG GGAG      82.
    7000     CACGACCAG GTCG      82.
    7036     TCCTGGTAG AAAG      77.
    7155     GCCCTCTAG GTTC      78.
    7230     CACACACAG GAAG      81.
    7264     ACTCTGGAG CAGC      77.
    7267     CTGGAGCAG CACA      78.
    7610     TCCACGTAG TTCT      81.
    7621     CTCGTTCAG TAAC      79.
    7642     CTCCTTCAG CTGG      77.
    7737     TGGAACCAG AGTC      78.
    7766     GCTGCCCAG ATCC      83.
    7772     CAGATCCAG CGTG      77.
    7929     TCGGCAAAG ATGA      77.
    8045     TTCTGGCAG TCAT      86.
    8194     TGGGTACAG GCTG      78.
    8208     GTGTCCCAG AACT      77.
    8251     TCTTTGCAG GACC      87.
    8262     CCCTGACAG GAGA      78.
    8297     GTCCTGCAG CTTC      80.
    8433     TCCACATAG GCTG      83.
    8463     CTGTTTCAG TGTG      78.
    8475     GCACAACAG GTGC      79.
    8545     GTCCACTAG AATC      78.
    8745     AACCTTTAG GGTG      81.
    9021     TCCTTTTAG CCCC      91.
    9215     TTCAACCAG AATG      78.
    9296     TGCTCCCAG GCAG      80.
    9300     CCCAGGCAG AATT      78.
    9451     TGTCCGAAG GGAC      78.
    9481     CCCTTGCAG ATGC      86.
    9538     GTCGTCCAG CTCC      81.
    9544     CAGCTCCAG GCTC      84.
    9736     AACCTGCAG AATT      84.

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Last modified: Tue 1 June 1999, [email protected]