SpliceView Output for fragment 2 (10001-20100)

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Acceptor sites

Donor sites

ID   FRAG2               
XX
OS   Homo sapiens
XX
CC   direct strand
XX
SQ   10100 bp
XX
CC   Potential splice signals:
 
DONOR SITES:
POSITION        EXON INTRON    SCORE
      54         AAT GTGAGA      86.
     369         CCT GTGAGT      84.
     912         TCG GTGAGA      82.
    1015         ACC GTAAGT      81.
    1399         CTG GTAAAT      84.
    1579         GAG GTGCAA      76.
    1684         GTG GTGAGA      85.
    2342         CAG GTAGCG      81.
    2583         AGA GTGAGA      81.
    2591         AAG GTGAGA      89.
    2663         CAG GTGGTG      80.
    3034         CAG GTAACT      82.
    3333         TAT GTGAGG      82.
    3388         AGC GTGAGA      77.
    3451         CAC GTGAGG      82.
    3557         ACG GTACGT      83.
    3600         CCC GTGTGT      76.
    3602         CGT GTGTGT      76.
    3784         GAG GTAAAA      82.
    3854         ACT GTGCGT      74.
    4027         CTG GTAATA      80.
    4104         TAG GTATAT      77.
    4202         ACT GTGTGT      78.
    4204         TGT GTGTGT      76.
    4206         TGT GTGTGT      75.
    4208         TGT GTGTGT      75.
    4210         TGT GTGTGT      75.
    4212         TGT GTGTGT      76.
    4214         TGT GTGTGT      75.
    4216         TGT GTGTGT      75.
    4218         TGT GTGTGT      75.
    4220         TGT GTGTGT      75.
    4222         TGT GTGTGT      75.
    4224         TGT GTGTGT      75.
    4226         TGT GTGTGT      75.
    4228         TGT GTGTGT      75.
    4230         TGT GTGTGT      75.
    4232         TGT GTGTGT      75.
    4234         TGT GTGTGT      75.
    4236         TGT GTGTGT      75.
    4238         TGT GTGTGT      75.
    4240         TGT GTGTGT      75.
    4242         TGT GTGTGT      75.
    4244         TGT GTGTGT      75.
    4246         TGT GTGTGT      75.
    4248         TGT GTGTGT      75.
    4250         TGT GTGTGT      75.
    4252         TGT GTGTGT      75.
    4254         TGT GTGTGT      75.
    4274         GGG GTAAAG      79.
    4590         GGA GTGAGT      80.
    4709         AAG GTGTGT      85.
    4996         CAG GTGTCC      77.
    5029         CAG GTGAAA      86.
    5130         GGA GTGCGT      76.
    5188         GAG GTGTAG      77.
    5268         AAG GTGGGG      87.
    5361         GCC GTGAGC      78.
    5403         AAA GTAAGA      84.
    5482         AAG GTGCTT      80.
    5501         CCA GTAAGG      82.
    5585         GTG GTCAGA      79.
    5607         GAG GTGCTT      76.
    5733         ACG GTATTG      74.
    5898         TGC GTGTGT      75.
    6029         CTG GTACGG      83.
    6084         ACT GTGAGT      82.
    6124         GTG GTGAGG      86.
    6154         CTT GTGTGT      79.
    6170         AAG GTGTTT      77.
    6284         AAC GTAAGG      81.
    6423         GAG GTGGGG      85.
    6573         CAG GTGAAT      86.
    6662         CAC GTGAGC      84.
    6795         TTT GTAAGG      77.
    6928         CCT GTGTGT      76.
    7103         TTT GTGTGT      74.
    7350         AAG GTGACA      82.
    7406         AAA GTGGGT      84.
    7600         GCT GTGAGT      82.
    7716         CTG GTAAAT      82.
    7738         TTA GTGAGG      75.
    7743         GAG GTGATG      81.
    7767         TGT GTAGGT      76.
    7771         TAG GTATTT      78.
    7837         GTG GTCAGC      78.
    7975         GAC GTGAGG      81.
    8230         AAG GTACAG      80.
    8307         GCA GTATGT      76.
    8554         AGC GTGAGG      75.
    8775         CAG GTGACC      85.
    8813         AAA GTATGT      78.
    9034         GAG GTGCCG      76.
    9226         CAG GTGCTA      77.
    9239         CAG GTGATA      81.
    9565         ACT GTAGGT      76.
    9669         CAG GTGTTT      81.
    9745         GCT GTGTGT      74.
    9774         CAG GTAAGT      93.
    9778         TAA GTGTGT      75.
    9865         TCG GTAAAT      79.
    9930         CAG GTGAGC      90.
   10085         CTG GTACGA      79.
 
ACCEPTOR SITES:
POSITION        INTRON EXON    SCORE
      31     TCCCTGCAG ATCG      89.
      41     TCGCCACAG AGGC      80.
      81     CCTCACCAG AGAA      82.
     168     TGTCGACAG TATT      78.
     194     TGTATCCAG TGTT      79.
     229     TCTGCGCAG GAAC      88.
     281     TTCTCACAG GCCA      89.
     428     TTTCCAAAG GACA      82.
     512     CTTCTAAAG GTTA      79.
     706     TTCATATAG TCTA      80.
     799     TTCTTTTAG TGTT      83.
     877     TTATCTTAG TCTC      78.
     946     TTGGCACAG CTTG      77.
     962     TTCTAAAAG TTAA      78.
    1104     TGTTTGCAG TGAC      77.
    1136     CTATTTTAG CGGG      81.
    1243     ATTTCCCAG TGTG      83.
    1487     CGTCTCCAG GAGA      92.
    1672     TGACCCCAG AGAG      77.
    1715     TTCTTCTAG TGTC      78.
    1761     CTCATGAAG CATT      78.
    1798     AATCTGTAG CTAA      77.
    2008     TCCCCACAG TATA      86.
    2047     TTCTCCAAG TCCA      77.
    2136     CTCTCTCAG TTGC      85.
    2190     AGGTCTCAG ATCG      77.
    2208     GTCTCCCAG GAGC      82.
    2332     TCATCGAAG GGCT      77.
    2664     TGTGTCCAG GTGG      86.
    2673     GTGGTGCAG GAGG      77.
    2742     ACCATCCAG AACG      83.
    2769     GTGTTCCAG GGAG      83.
    2929     CCTCAACAG TTGG      77.
    3009     CACCCTCAG CATC      81.
    3035     TAAATTCAG GTAA      78.
    3181     TTTTCTTAG ATCA      79.
    3186     TTAGATCAG TTTT      78.
    3278     TCCTTTCAG ATAG      81.
    3282     TTCAGATAG ATAG      79.
    3437     TCCGTGCAG CTGT      78.
    3613     TGTGTTCAG TTGT      78.
    3730     TGTTGACAG GACT      84.
    4105     AGTCTTTAG GTAT      77.
    4306     TTCCCTCAG TGTT      81.
    4355     CCACAATAG TTGC      77.
    4375     TGTTTCCAG GGTC      86.
    4390     GATCTCCAG GGAC      80.
    4431     CCTTCTCAG TTCC      89.
    4444     GATTTGCAG ACCG      84.
    4472     GCTCATCAG CGGG      78.
    4661     TGTCTTCAG ATTC      86.
    4782     TTATTTTAG ACTT      80.
    4868     TCTATCCAG GCAT      86.
    4876     GGCATACAG TTCT      77.
    4902     TGTTAACAG GTCT      85.
    4939     TTTTTGCAG ATTC      87.
    4997     TACATGCAG GTGT      81.
    5072     ATCATGCAG CAGG      80.
    5075     ATGCAGCAG GAGA      78.
    5232     CAATGGCAG CGAC      84.
    5400     CTTCTTCAG TAAA      83.
    5503     CTTCACCAG TAAG      81.
    5566     CGCCATCAG GACC      79.
    5584     CGCCTTCAG TGGT      80.
    5591     AGTGGTCAG ACCA      77.
    5711     TTTCATTAG TAAT      79.
    5848     TCCATCCAG GGAC      77.
    5913     TCGCTTCAG ATAC      83.
    6171     TTCATTAAG GTGT      80.
    6231     AACATCCAG AATT      78.
    6420     TTGATGCAG AGAG      77.
    6475     ATTTCACAG GTCA      86.
    6535     TGGCTCTAG CGTG      79.
    6564     ACCTCCCAG TGCT      85.
    6574     GCTCAACAG GTGA      83.
    6732     CACTGTCAG CCGA      77.
    6739     AGCCGACAG GAAG      80.
    6801     CTTTGTAAG GAAG      79.
    6843     CTAGCTCAG CGGC      78.
    6979     GTTCTCCAG CTTT      88.
    6988     CTTTCTAAG CTTG      79.
    7026     AATCTGCAG TTTC      79.
    7038     CTTTCGAAG GGGA      82.
    7296     TCTCAACAG AAGC      84.
    7321     GCTTTTCAG AGGA      77.
    7442     GTTCCACAG ACTG      84.
    7475     CATCTGCAG ATCT      85.
    7574     CTGCTGCAG AGGT      81.
    7637     TTCATTTAG GCAC      80.
    7656     TAGCTACAG GCTA      79.
    7708     TGCTTTCAG AACA      84.
    7772     CCTGTGTAG GTAT      82.
    7974     ACCTTCCAG ACGT      81.
    8266     TCCATGTAG GACC      88.
    8289     ATCTCAAAG ATAT      77.
    8422     CAGTCATAG AATG      77.
    8614     AAACTCCAG GTCC      83.
    8667     GACCATCAG AAAC      79.
    8776     ACCATGCAG GTGA      78.
    8867     TTGCTTCAG ACGT      86.
    8968     CATCATCAG GAGG      82.
    9006     CCGCGTCAG AAGG      82.
    9009     CGTCAGAAG GAAC      77.
    9124     ACCGTCCAG GAGT      83.
    9279     GTGTTCCAG ATTA      84.
    9286     AGATTACAG TCCA      79.
    9419     GTTCCGCAG GATG      85.
    9453     TCTTTAAAG TGCT      78.
    9557     TTCTCCAAG ATCA      85.
    9570     TCACTGTAG GTCC      78.
    9630     CTTCTGCAG AAGG      81.
    9670     TTATTGCAG GTGT      91.
    9702     TTCTGTCAG GAGG      79.
    9775     TTTTTACAG GTAA      87.
    9998     GCCCTTCAG GCCC      83.
   10075     GTGTTGAAG GACC      81.

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Last modified: Tue 1 June 1999, [email protected]