FGene output

Finding gene by exon search and assembling

Name: Seq_name:all
First three lines of sequence:
TTANGATTCGTTTCCATGGAGCTGCCCATGACCATTTACACCATATACATACTGTCTCTGAGCAGAGATACGACA
CTCAGGCTGGTGATAAGGGAACACAGCTGTCAGGGGGCCAGAAGCAGCGTGTCGCCATAGCCCGAGCCATCATCC
GCAACCCCAAACTGTTGCTCCTGGACGAGGCCACGTCTGCGCTCGACACTGAGAGTGAGAAGGTGAGACTTTATT


fgene  Thu Jun  3 19:33:29 CDT 1999
>Seq_name:all                                                                   
 length of sequence -  39951
 number of predicted exons - 28
 positions of predicted exons:
    109 -     212 w=   4.87  ORF:    111 -     212
   2090 -    2152 w=   7.64  ORF:   2090 -    2152
   4133 -    4257 w=  11.03  ORF:   4133 -    4255
   4377 -    4548 w=   6.06  ORF:   4378 -    4548
   5805 -    5930 w=   8.67  ORF:   5805 -    5930
   6255 -    6458 w=   4.89  ORF:   6255 -    6458
   7091 -    7252 w=   9.93  ORF:   7091 -    7252
   7344 -    7538 w=   4.40  ORF:   7344 -    7538
   9203 -    9295 w=   6.43  ORF:   9203 -    9295
   9569 -    9652 w=   4.70  ORF:   9569 -    9652
   9726 -    9929 w=   9.36  ORF:   9726 -    9929
  12136 -   12342 w=   6.72  ORF:  12136 -   12342
  12496 -   12591 w=   4.72  ORF:  12496 -   12591
  14431 -   14590 w=   4.52  ORF:  14431 -   14589
  14661 -   14709 w=   4.21  ORF:  14663 -   14707
  15232 -   15403 w=   7.50  ORF:  15233 -   15403
  15913 -   16029 w=   5.41  ORF:  15913 -   16029
  16171 -   16284 w=   4.72  ORF:  16171 -   16284
  17296 -   17406 w=   5.60  ORF:  17296 -   17406
  17475 -   17600 w=   9.47  ORF:  17475 -   17600
  17772 -   18230 w=  11.45  ORF:  17772 -   18230
  18614 -   18775 w=   6.50  ORF:  18614 -   18775
  19670 -   19774 w=  10.21  ORF:  19670 -   19774
  19853 -   19930 w=   4.52  ORF:  19853 -   19930
  20075 -   20158 w=   4.69  ORF:  20075 -   20158
  20232 -   20435 w=   5.07  ORF:  20232 -   20435
  23183 -   23278 w=   4.72  ORF:  23183 -   23278
  39021 -   39092 w=   7.56  ORF:  39021 -   39092
 Length of Coding region-   3944bp           Amino acid sequence -   1313aa
GQKQRVAIARAIIRNPKLLLLDEATSALDTESEKALLKGPKYGHEERNSGKTEFELLTSF
TSKEQTAYAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTAT
GFSFLMIYLSYALAFWYGTTLVLNKEYTIGNLLTILNDMSFHVRNGQTIALVGSSGCGKS
TTIQLLQRFYDPQKGSIFIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLD
VTQEEIERATKESNAYDFIMNLPDVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGT
HSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSL
LAVSEGTKEEKEKFECDQDNIEEFWGFQGFCFSKSGEILTLNLRLKAFISMMRQDLSWYD
NPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIIISFVYGWELTLLILAVV
PILAVAGAAEVKLLTGHAAEDKKELEMAGKLLDGVDVKQLNVHWLRSQIGIVSQEPVLFD
CSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQKQRVAIARAIIRNPKLLLLDE
ATSALDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHN
ASGWNSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTL
VILAVSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFF
VVLIGAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKN
IHFNYPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGH
DIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNL
PDVRPHLWLPYLSLAPSRSNANIYIMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRN
PKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIRNADIIAGFSNGKIVE
QGTHSQLMEIKGVYHGLVTMQVFADPDRDSVRRKSEFISLMFVVIGCVSFVTMFLQGYCF
GKSGEILTLKLRLRAFTAMMRQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIM
QNFANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKKQ
RVAIARAIIRNPKLLLLDEATSALDTESEKPPNPLPDSCTYEHKRTENNGDFG*