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Open reading frame 1 (3397-4062)

 FASTA searches a protein or DNA sequence data bank
 version 3.2t01  December 31, 1998
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

/tmp/fastainput441226: 222 aa
 >3397                3397..4062
 vs  SWISS PROT library
searching /disk2/data/fasta/swissprot36.fasta 0 library

       opt      E()
< 20   176     0:==
  22     0     0:           one = represents 114 library sequences
  24     0     0:
  26     1     2:*
  28    11    17:*
  30    97   102:*
  32   435   393:===*
  34  1248  1067:=========*=
  36  2492  2191:===================*==
  38  3998  3620:===============================*====
  40  5403  5050:============================================*===
  42  6310  6173:======================================================*=
  44  6818  6810:===========================================================*
  46  6664  6936:===========================================================*
  48  6274  6640:========================================================  *
  50  5776  6059:===================================================  *
  52  4857  5327:===========================================   *
  54  4346  4550:=======================================*
  56  3685  3801:=================================*
  58  3276  3120:===========================*=
  60  2551  2528:======================*
  62  2128  2026:=================*=
  64  1596  1612:==============*
  66  1309  1274:===========*
  68   986  1002:========*
  70   784   785:======*
  72   599   614:=====*
  74   494   478:====*
  76   381   372:===*
  78   318   289:==*
  80   207   225:=*
  82   166   172:=*
  84   161   136:=*
  86    86   105:*
  88    83    82:*          inset = represents 1 library sequences
  90    69    63:*
  92    37    49:*         :=====================================  *
  94    36    38:*         :==================================== *
  96    35    29:*         :============================*======
  98    28    23:*         :======================*=====
 100    18    17:*         :================*=
 102    18    14:*         :=============*====
 104     7    10:*         :=======  *
 106    13     8:*         :=======*=====
 108     7     6:*         :=====*=
 110     6     5:*         :====*=
 112     4     4:*         :===*
 114     0     3:*         :  *
 116     4     2:*         :=*==
 118     0     2:*         : *
>120    21     1:*         :*====================
26840295 residues in 74019 sequences
 statistics extrapolated from 50000 to 73837 sequences
  Expectation_n fit: rho(ln(x))= 5.3813+/-0.000512; mu= 4.0012+/- 0.029;
 mean_var=68.0130+/-13.412, 0's: 138 Z-trim: 40  B-trim: 0 in 0/64
 Kolmogorov-Smirnov  statistic: 0.0188 (N=29) at  44

FASTA (3.2 December, 1998) function (optimized, BL50 matrix) ktup: 2
 join: 36, opt: 24, gap-pen: -12/ -2, width:  16 reg.-scaled
 Scan time: 29.250
The best scores are:                             initn init1 opt z-sc E(73837)
sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANC  (1280)  549  270  281 339.2 3.2e-12
sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANC  (1279)  513  256  280 338.0 3.8e-12
sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE   (1277)  534  258  271 327.1 1.5e-11
sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANC  (1276)  524  252  270 325.9 1.8e-11
sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANC  (1276)  506  249  270 325.9 1.8e-11
sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANC  (1276)  524  252  269 324.7 2.1e-11
sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANC  (1281)  507  248  268 323.4 2.4e-11
sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE   (1278)  474  242  264 318.6 4.5e-11
sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANC  (1276)  540  259  259 312.5 9.9e-11
sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANC  (1276)  532  256  256 308.9 1.6e-10
sp|P34712|MDR1_CAEEL MULTIDRUG RESISTANC  (1321)  177  151  184 221.4 1.2e-05
sp|P34713|MDR3_CAEEL MULTIDRUG RESISTANC  (1254)  163  137  154 185.3 0.0012
sp|P36619|PMD1_SCHPO LEPTOMYCIN B RESIST  (1362)  235  134  153 183.6 0.0015
sp|Q03519|TAP2_HUMAN ANTIGEN PEPTIDE TRA  ( 686)  136  107  141 173.5 0.0055
sp|Q00449|MDR4_DROME MULTIDRUG RESISTANC  (1302)  232  110  131 157.2 0.044
sp|Q00748|MDR5_DROME MULTIDRUG RESISTANC  (1302)  145  119  130 156.0 0.052
sp|P36371|TAP2_MOUSE ANTIGEN PEPTIDE TRA  ( 702)  141  107  124 152.7 0.079
sp|Q06034|MDR1_LEIEN MULTIDRUG RESISTANC  (1280)  228  117  126 151.2 0.095
sp|P36372|TAP2_RAT ANTIGEN PEPTIDE TRANS  ( 703)  142  108  114 140.6 0.37
sp|P22717|CYG2_RAT GUANYLATE CYCLASE SOL  ( 682)   67   43  108 133.5 0.92
sp|O06314|YA26_MYCTU HYPOTHETICAL 24.5 K  ( 227)   37   37   94 123.7  3.2
sp|O32140|YUNK_BACSU HYPOTHETICAL 44.9 K  ( 430)   41   41   92 117.1  7.6
sp|P33311|MDL2_YEAST ATP-DEPENDENT PERME  ( 820)   69   43   95 116.6  8.1
sp|P34143|RABC_DICDI RAS-RELATED PROTEIN  ( 196)   31   31   87 116.2  8.5
sp|P12866|STE6_YEAST MATING FACTOR A SEC  (1290)   94   62   97 116.0  8.7

>>sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANCE PROTEIN 1 (P  (1280 aa)
 initn: 549 init1: 270 opt: 281 Z-score: 339.2 expect() 3.2e-12
Smith-Waterman score: 474;  48.447% identity in 161 aa overlap

                             10        20        30        40      
3397                 LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQM
                                     . ::.  . :.. ::: .: .:::.::.:.
sp|P08 EMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQV
            80        90       100       110       120       130   

         50        60        70        80        90       100      
3397   SLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGV
       :.: :.:.:: ..::. :::.::.:.:.:.:: ..::::::::.                
sp|P08 SFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDVHDVGELNTRLTD----------------
           140       150       160       170                       

        110       120       130       140       150       160      
3397   VVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPV
                    :: ::.:::::: :...:. .::.:.:..::..::::::::::::::
sp|P08 -------------DVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPV
                    180       190       200       210       220    

        170       180       190       200       210       220      
3397   LGLSAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP    
       ::::::...:.                                                 
sp|P08 LGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEA
          230       240       250       260       270       280    

>>sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANCE PROTEIN 3 (P  (1279 aa)
 initn: 513 init1: 256 opt: 280 Z-score: 338.0 expect() 3.8e-12
Smith-Waterman score: 475;  43.407% identity in 182 aa overlap

                                            10        20           
3397                                LLVDKGSSPPYLAEFGYSNLQP------LFF
                                     .:: ...  . ..:. : :.:       . 
sp|P21 LFMSLGTIMAIAHGSGLPLMMIVFGEMTDKFVDTAGNFSFPVNFSLSLLNPGKILEEEMT
           60        70        80        90       100       110    

          30        40        50        60        70        80     
3397   RFSIYYSILGFAVLVVAYLQMSLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELN
       :.. ::: :: .:::.::.:.:.:::.:.:: ..::. :::.:..:.:.:.:...: :::
sp|P21 RYAYYYSGLGAGVLVAAYIQVSFWTLAAGRQIRKIRQKFFHAILRQEIGWFDINDTTELN
          120       130       140       150       160       170    

          90       100       110       120       130       140     
3397   TRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITS
       ::::.                             :. ::.::::::.:...::..::...
sp|P21 TRLTD-----------------------------DISKISEGIGDKVGMFFQAVATFFAG
                                       180       190       200     

         150       160       170       180       190       200     
3397   FVIGFVHGWKLTLVILAISPVLGLSAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVG
       :..::..::::::::.::::.::::::...:.                            
sp|P21 FIVGFIRGWKLTLVIMAISPILGLSAAVWAKILSAFSDKELAAYAKAGAVAEEALGAIRT
         210       220       230       240       250       260     

         210       220                                             
3397   QKPRLGTTRAGFGHPHP                                           
                                                                   
sp|P21 VIAFGGQNKELERYQKHLENAKEIGIKKAISANISMGIAFLLIYASYALAFWYGSTLVIS
         270       280       290       300       310       320     

>>sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE PROTEIN 1 (P-G  (1277 aa)
 initn: 534 init1: 258 opt: 271 Z-score: 327.1 expect() 1.5e-11
Smith-Waterman score: 447;  47.020% identity in 151 aa overlap

                   10        20        30        40        50      
3397       LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQMSLWTLTAARQ
                                     .. ::. .: .::.:::.:.::: :.:.::
sp|P43 PHSDRAITNQSEINSTHTVSDTSLEEDMAMYAYYYTGIGAGVLIVAYIQVSLWCLAAGRQ
             90       100       110       120       130       140  

         60        70        80        90       100       110      
3397   AKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFP
        ..::. :::.::.:.:.:.::...::::::::.                          
sp|P43 IHKIRQKFFHAIMNQEIGWFDVNDAGELNTRLTD--------------------------
            150       160       170                                

        120       130       140       150       160       170      
3397   GAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSK
          :: ::..::::: :...:. .:: ..:.:::. ::::::::::.::..:::.:...:
sp|P43 ---DVSKINDGIGDKLGMFFQSITTFSAGFIIGFISGWKLTLVILAVSPLIGLSSAMWAK
           180       190       200       210       220       230   

        180       190       200       210       220                
3397   VNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP              
       :                                                           
sp|P43 VLTSFTNKELQAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRVGIKKAIT
           240       250       260       270       280       290   

>>sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANCE PROTEIN 3 (P  (1276 aa)
 initn: 524 init1: 252 opt: 270 Z-score: 325.9 expect() 1.8e-11
Smith-Waterman score: 459;  42.000% identity in 200 aa overlap

                             10        20        30        40      
3397                 LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQM
                                     ...:.  .  .. ::. .: .::.:::.:.
sp|P21 IFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQV
      70        80        90       100       110       120         

         50        60        70        80        90       100      
3397   SLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGV
       :.: :.:.:: ..::. :::.::.:.:.:.:: ..::::::::.                
sp|P21 SFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD----------------
     130       140       150       160       170                   

        110       120       130       140       150       160      
3397   VVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPV
                    :: ::.:::::: :...:: .::. .:.:::..::::::::::::::
sp|P21 -------------DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPV
                        180       190       200       210       220

        170            180        190       200       210       220
3397   LGLSAALYSKV-----NISIHQWCH-NPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHP
       :::::....:.     .  .: . . . : :    :  .:. . ::: .:          
sp|P21 LGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA
              230       240       250       260       270       280

                                                                   
3397   HP                                                          
                                                                   
sp|P21 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFS
              290       300       310       320       330       340

>>sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANCE PROTEIN 2 (P  (1276 aa)
 initn: 506 init1: 249 opt: 270 Z-score: 325.9 expect() 1.8e-11
Smith-Waterman score: 459;  46.835% identity in 158 aa overlap

                          10        20        30        40         
3397              LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQMSLW
                                     :.  . :.. ::: :: .:::.::.:.:.:
sp|P21 GEMTDKFVDNTGNFSLPVNFSLSMLNPGRILEEEMTRYAYYYSGLGGGVLVAAYIQVSFW
          80        90       100       110       120       130     

      50        60        70        80        90       100         
3397   TLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVI
       ::.:.:: :.::. :::.:..:...:.:.  : :::::::.                   
sp|P21 TLAAGRQIKKIRQKFFHAILRQEMGWFDIKGTTELNTRLTD-------------------
         140       150       160       170                         

     110       120       130       140       150       160         
3397   ICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGL
                 :: ::.::::::.:...:: .::...:..::..::::::::.::::.:::
sp|P21 ----------DVSKISEGIGDKVGMFFQAIATFFAGFIVGFIRGWKLTLVIMAISPILGL
                  180       190       200       210       220      

     170       180       190       200       210       220         
3397   SAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP       
       :.:...:.                                                    
sp|P21 STAVWAKILSTFSDKELAAYAKAGAVAEEAPGAIRTVIAFGGQNKELERYQKHLENAKKI
        230       240       250       260       270       280      

>>sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANCE PROTEIN 1 (P  (1276 aa)
 initn: 524 init1: 252 opt: 269 Z-score: 324.7 expect() 2.1e-11
Smith-Waterman score: 456;  46.584% identity in 161 aa overlap

                             10        20        30        40      
3397                 LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQM
                                     ...:.  .  .. ::. .: .::.:::.:.
sp|P21 FGDMTDSFASVGNIPTNATNNATQVNASDIFGKLEEEMTTYAYYYTGIGAGVLIVAYIQV
               80        90       100       110       120       130

         50        60        70        80        90       100      
3397   SLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGV
       :.: :.:.:: ..::. :::.::.:.:.:.:: ..::::::::.                
sp|P21 SFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD----------------
              140       150       160       170                    

        110       120       130       140       150       160      
3397   VVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPV
                    :: ::.:::::: :...:: .::. .:.:::..::::::::::::::
sp|P21 -------------DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPV
                       180       190       200       210       220 

        170       180       190       200       210       220      
3397   LGLSAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP    
       :::::....:.                                                 
sp|P21 LGLSAGIWAKILSSFTDKELQAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA
             230       240       250       260       270       280 

>>sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANCE PROTEIN 3 (P  (1281 aa)
 initn: 507 init1: 248 opt: 268 Z-score: 323.4 expect() 2.4e-11
Smith-Waterman score: 463;  46.835% identity in 158 aa overlap

                          10        20        30        40         
3397              LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQMSLW
                                     :.  . :.. ::: :: .:::.::.:.:.:
sp|P23 GEMTDKFVNNAGNFSLPVNFSLSMINPGRILEEEMTRYAYYYSGLGGGVLVAAYIQVSFW
       80        90       100       110       120       130        

      50        60        70        80        90       100         
3397   TLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVI
       ::.:.:: :.::. :::.:..:...:.:.  : :::::::.                   
sp|P23 TLAAGRQIKKIRQNFFHAILRQEMGWFDIKGTTELNTRLTD-------------------
      140       150       160       170                            

     110       120       130       140       150       160         
3397   ICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGL
                 :. ::.::::::.:...::..::...:..::..::::::::.::::.:::
sp|P23 ----------DISKISEGIGDKVGMFFQAVATFFAGFIVGFIRGWKLTLVIMAISPILGL
               180       190       200       210       220         

     170       180       190       200       210       220         
3397   SAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP       
       :::...:.                                                    
sp|P23 SAAVWAKILSTFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHLENAKKI
     230       240       250       260       270       280         

>>sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE PROTEIN 2 (P-G  (1278 aa)
 initn: 474 init1: 242 opt: 264 Z-score: 318.6 expect() 4.5e-11
Smith-Waterman score: 439;  40.659% identity in 182 aa overlap

                                            10        20           
3397                                LLVDKGSSPPYLAEFGYSNLQP------LFF
                                     .::....    ..:. : :.:       . 
sp|Q08 LFMLLGTAMAIAHGSGLPLMMIVFGEMTDKFVDNAGNFSLPVNFSLSMLNPGRILEEEMT
              60        70        80        90       100       110 

          30        40        50        60        70        80     
3397   RFSIYYSILGFAVLVVAYLQMSLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELN
       :.. ::: :: .::..::.:.:.:::.:.:: ..::. :::.:..:...:.:.  : :::
sp|Q08 RYAYYYSGLGGGVLLAAYIQVSFWTLAAGRQIRKIRQKFFHAILRQEMGWFDIKGTTELN
             120       130       140       150       160       170 

          90       100       110       120       130       140     
3397   TRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITS
       ::::.                             :. ::.::::::.:...:: .::...
sp|Q08 TRLTD-----------------------------DISKISEGIGDKVGMFFQAIATFFAG
                                          180       190       200  

         150       160       170       180       190       200     
3397   FVIGFVHGWKLTLVILAISPVLGLSAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVG
       :..::..::::::::.::. .::::.:...:.                            
sp|Q08 FIVGFIRGWKLTLVIMAITAILGLSTAVWAKILSTFSDKELAAYAKAGAVAEEALGAIRT
            210       220       230       240       250       260  

         210       220                                             
3397   QKPRLGTTRAGFGHPHP                                           
                                                                   
sp|Q08 VIAFGGQNKELERYQKHLENAKKIGIKKAISANISMGIAFLLIYASYALAFWYGSTLVIS
            270       280       290       300       310       320  

>>sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANCE PROTEIN 1 (P  (1276 aa)
 initn: 540 init1: 259 opt: 259 Z-score: 312.5 expect() 9.9e-11
Smith-Waterman score: 458;  43.429% identity in 175 aa overlap

                                           10        20        30  
3397                               LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYS
                                     . . :.:     .. :.:.  .  .. ::.
sp|P06 IHGTLLPLLMLVFGNMTDSFTKAEASILPSITNQSGPNSTLIISNSSLEEEMAIYAYYYT
       60        70        80        90       100       110        

             40        50        60        70        80        90  
3397   ILGFAVLVVAYLQMSLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWV
        .: .::.:::.:.::: :.:.:: ..::. :::.::.:.:.:.:: ..::::::::.  
sp|P06 GIGAGVLIVAYIQVSLWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD--
      120       130       140       150       160       170        

            100       110       120       130       140       150  
3397   THIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVH
                                  :: ::..::::: :...:. .::...:.:::. 
sp|P06 ---------------------------DVSKINDGIGDKIGMFFQSITTFLAGFIIGFIS
                                   180       190       200         

            160       170       180       190       200       210  
3397   GWKLTLVILAISPVLGLSAALYSKVNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGT
       ::::::::::.::..:::.::..::                                   
sp|P06 GWKLTLVILAVSPLIGLSSALWAKVLTSFTNKELQAYAKAGAVAEEVLAAIRTVIAFGGQ
     210       220       230       240       250       260         

>>sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANCE PROTEIN 2 (P  (1276 aa)
 initn: 532 init1: 256 opt: 256 Z-score: 308.9 expect() 1.6e-10
Smith-Waterman score: 445;  45.695% identity in 151 aa overlap

                   10        20        30        40        50      
3397       LLVDKGSSPPYLAEFGYSNLQPLFFRFSIYYSILGFAVLVVAYLQMSLWTLTAARQ
                                     .. ::. .: .::.:::.:.:.: :.:.::
sp|P21 ETSIWPNMTNQSEINNTEVISGSLEEDMATYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQ
             90       100       110       120       130       140  

         60        70        80        90       100       110      
3397   AKRIRELFFHGIMQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFP
        ..::. :::.::.:.:.:.:: . ::::::::.                          
sp|P21 INKIRQKFFHAIMNQEIGWFDVHDIGELNTRLTD--------------------------
            150       160       170                                

        120       130       140       150       160       170      
3397   GAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSK
          :: ::..::::: :...:. .::...:..::. ::::::::::.::..:::.:...:
sp|P21 ---DVSKINDGIGDKIGMFFQSIATFLAAFIVGFISGWKLTLVILAVSPLIGLSSAMWAK
           180       190       200       210       220       230   

        180       190       200       210       220                
3397   VNISIHQWCHNPVLEGHSPAKGSVFCLVGQKPRLGTTRAGFGHPHP              
       :                                                           
sp|P21 VLTSFTNKELQAYAKAGAVAEEVLAAIRTVIAFGGQNKELERYNKNLEEAKNVGIKKAVT
           240       250       260       270       280       290   



222 residues in 1 query   sequences
26840295 residues in 74019 library sequences
 Tcomplib (4 proc)[version 3.2t01  December 31, 1998]
 start: Thu May 27 10:44:32 1999 done: Thu May 27 10:44:50 1999
 Scan time: 29.250 Display time:  0.310

Function used was  FASTA 

[ GCG | w2h | Staden | GeneExplorer ]

Last modified: Sun, 23 May 1999, [email protected]