BLAST Search results

Blast search for open reading frame 4 (32322-33161)

BLASTP 2.0.6 [Sept-16-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 32322               32322..33161
         (280 letters)

Database: swissprot36
           74,019 sequences; 26,840,295 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE.                   45  1e-04
sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTEIN HS6-LIKE.                   42  0.001
sp|P32429|RL7A_CHICK 60S RIBOSOMAL PROTEIN L7A.                        40  0.005
sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTEIN HS6.                        36  0.078
sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A.                        32  1.2
sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP-LIKE NUCLEAR PROTEIN 2.       32  1.2
sp|Q93073|Y256_HUMAN HYPOTHETICAL PROTEIN KIAA0256.                    32  1.2
sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PROTEIN YEL026W.                  32  1.5
sp|P38827|SET1_YEAST SET1 PROTEIN.                                     32  1.5
sp|P46223|RL7A_DROME 60S RIBOSOMAL PROTEIN L7A.                        31  2.0
sp|P46821|MAPB_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 1B.                31  3.4
sp|P21396|AOFA_RAT AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3...    30  4.5
sp|P49811|MYOD_PIG MYOBLAST DETERMINATION PROTEIN 1.                   30  4.5
sp|P08799|MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE.                30  4.5
sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG.          30  5.9
sp|P16824|DUT_HCMVA DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDRO...    30  5.9
sp|P33308|CSE2_YEAST CHROMOSOME SEGREGATION PROTEIN CSE2.              29  7.7

>sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE.
           Length = 117
           
 Score = 45.3 bits (105), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 119 VAARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQ 178
           VA  +K+  G NEVTKA+ER   KL+++ + VKP+ ++ HL  L   + +P   V    Q
Sbjct: 21  VAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS-KQ 79

Query: 179 SVSEPLGLK 187
            + +  GL+
Sbjct: 80  DLGKAAGLE 88


>sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTEIN HS6-LIKE.
           Length = 130
           
 Score = 42.2 bits (97), Expect = 0.001
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 124 KLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEP 183
           K+  G NE TKA+ER + KL+++ + V+P+ ++ HL  L   + +P   V    +++ E 
Sbjct: 34  KIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSS-KKALGEA 92

Query: 184 LGLKSVLA 191
            GL+   A
Sbjct: 93  CGLQVATA 100


>sp|P32429|RL7A_CHICK 60S RIBOSOMAL PROTEIN L7A.
           Length = 265
           
 Score = 39.9 bits (91), Expect = 0.005
 Identities = 29/132 (21%), Positives = 60/132 (44%), Gaps = 11/132 (8%)

Query: 81  FRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNE 140
           +RP  K++K++   ++          A Q+   +G T       L  G+N VT  +E  +
Sbjct: 101 YRPETKQEKKQRLLAR----------AEQKAAGKGDTPTKRPPVLRAGVNTVTTLVENKK 150

Query: 141 LKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQ 200
            +L+++   V P  ++  L  L     VP C +   ++ +   +  K+   + F Q  P+
Sbjct: 151 AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKSKAR-LGRLVHRKTCTCVAFTQVNPE 209

Query: 201 ERDVFSNVVEAI 212
           ++   + +VEA+
Sbjct: 210 DKGALAKLVEAV 221


>sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTEIN HS6.
           Length = 116
           
 Score = 36.0 bits (81), Expect = 0.078
 Identities = 15/42 (35%), Positives = 27/42 (63%)

Query: 128 GINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVP 169
           G NE TK++ER   +L+ V + V+P+ ++ H+  L+  + VP
Sbjct: 32  GTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVP 73


>sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A.
           Length = 258
           
 Score = 32.1 bits (71), Expect = 1.2
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 119 VAARRKLAI--GINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQV--- 173
           V A++ + +  G+N VT  +E+++ +L+++   V P  ++  L  L    +VP C V   
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179

Query: 174 PRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAI 212
            RL   V +    K+   L       +++  FS ++EAI
Sbjct: 180 ARLGSIVHK----KTASVLCLTTVKNEDKLEFSKILEAI 214


>sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP-LIKE NUCLEAR PROTEIN 2.
           Length = 173
           
 Score = 32.1 bits (71), Expect = 1.2
 Identities = 14/47 (29%), Positives = 24/47 (50%)

Query: 128 GINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVP 174
           G+ EV KAL + E  L+++   + P  ++ H+  L     VP   +P
Sbjct: 76  GVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIP 122


>sp|Q93073|Y256_HUMAN HYPOTHETICAL PROTEIN KIAA0256.
           Length = 635
           
 Score = 32.1 bits (71), Expect = 1.2
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 11/73 (15%)

Query: 104 QDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLVC-KCVKPQ------HMM 156
           Q+   Q+ P R      ARR+L +G+ EVTK ++ N++K +++   C K Q        +
Sbjct: 235 QERIYQKDPVRA----KARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEAL 290

Query: 157 EHLITLSTTRDVP 169
            ++I ++  +++P
Sbjct: 291 YNVIAMAREQEIP 303


>sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PROTEIN YEL026W.
           Length = 126
           
 Score = 31.7 bits (70), Expect = 1.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 123 RKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVP 174
           R+L  G NE TK L R   + +++    +P  ++ HL  L   ++VP   VP
Sbjct: 31  RQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVP 82


>sp|P38827|SET1_YEAST SET1 PROTEIN.
           Length = 1080
           
 Score = 31.7 bits (70), Expect = 1.5
 Identities = 31/104 (29%), Positives = 51/104 (48%), Gaps = 7/104 (6%)

Query: 8   WVVLYLSSLRGLMAAAAKSAKKESKRYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKEN 67
           +++ Y SS  G +  AAK+A    +++  +  CF   F  K+  +  +  H ILN +   
Sbjct: 296 YLIKYASS-DGKINDAAKAAFSAVRKH-ESSGCFIMGF--KFEVILNK--HSILNNIISK 349

Query: 68  FVSIGLVKKEPKVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEP 111
           FV I  VKK  K+    +K K++EA   +  +LQ       +EP
Sbjct: 350 FVEIN-VKKLQKLQENLKKAKEKEAENEKAKELQGKDITLPKEP 392


>sp|P46223|RL7A_DROME 60S RIBOSOMAL PROTEIN L7A.
           Length = 271
           
 Score = 31.3 bits (69), Expect = 2.0
 Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 10/101 (9%)

Query: 118 DVAARRK---LAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQV- 173
           DV  ++K   ++ G N VTK +E+ + +L+++   V P  ++  L  L     VP C V 
Sbjct: 131 DVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVK 190

Query: 174 --PRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAI 212
              RL + V      K+   L        ++  F  V+EA+
Sbjct: 191 GKARLGRLVRR----KTCTTLALTTVDNNDKANFGKVLEAV 227


>sp|P46821|MAPB_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 1B.
           Length = 2468
           
 Score = 30.5 bits (67), Expect = 3.4
 Identities = 53/246 (21%), Positives = 96/246 (38%), Gaps = 31/246 (12%)

Query: 13  LSSLRGLMAAAAKSAKKESKRYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIG 72
           + S   +M    K  K E+K   P+ T    P   + SP+  E        +K       
Sbjct: 580 VESKEKVMVKKDKPVKTETK---PSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEK 636

Query: 73  LVKKEPKVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEV 132
            VKKE KV +P  KK+++E  + + +  +       +E PK+       ++++   I + 
Sbjct: 637 TVKKETKV-KPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKE----EVKKEVKKEIKKE 691

Query: 133 TKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSV---SEPLGLKSV 189
            K   + E+K     K VK +   E    +      P  ++ +L +     S PL     
Sbjct: 692 EKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKK 751

Query: 190 LALGFRQCLPQERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEE 249
            A                   A+ PKVP  +    +D+ A+ KP E +G+ + ++ E + 
Sbjct: 752 PA-------------------ALKPKVPKKEESVKKDSVAAGKPKE-KGKIKVIKKEGKA 791

Query: 250 GTPVSS 255
              V++
Sbjct: 792 AEAVAA 797


>sp|P21396|AOFA_RAT AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3.4) (MONOAMINE
           OXIDASE) (MAO-A).
           Length = 526
           
 Score = 30.1 bits (66), Expect = 4.5
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 33  RYIPTKTC-FTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKEPKVFRPWRKKKKQE 91
           +Y+  KT  F   F P W+PL   D + +  T+ E       + KE  V  PW+ +  QE
Sbjct: 99  QYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDE-------MGKEIPVDAPWQARHAQE 151

Query: 92  AAQSQDSDL 100
             +    DL
Sbjct: 152 WDKMTMKDL 160


>sp|P49811|MYOD_PIG MYOBLAST DETERMINATION PROTEIN 1.
           Length = 319
           
 Score = 30.1 bits (66), Expect = 4.5
 Identities = 21/67 (31%), Positives = 27/67 (39%), Gaps = 3/67 (4%)

Query: 203 DVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTTLQPLK 262
           D  S++VE+I  + P      L DTP    P     Q+    +E E GTP  S    P  
Sbjct: 250 DCLSSIVESISTESPAAPALLLADTPRESSPGP---QEAAAGSEVERGTPTPSPDAAPQC 306

Query: 263 VKKIVPN 269
                PN
Sbjct: 307 PASANPN 313


>sp|P08799|MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE.
            Length = 2116
            
 Score = 30.1 bits (66), Expect = 4.5
 Identities = 50/212 (23%), Positives = 85/212 (39%), Gaps = 33/212 (15%)

Query: 86   KKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDV---------------AARRKLAIGIN 130
            KKK ++    + +  + S  AA +E  K+ W +V               A+ +K+   + 
Sbjct: 1619 KKKLEQTLAERRAAEEGSSKAADEEIRKQVWQEVDELRAQLDSERAALNASEKKIKSLVA 1678

Query: 131  EVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVL 190
            EV +  E+ E ++L   K VK +  +E  + L   RD    Q+     S SE    K  L
Sbjct: 1679 EVDEVKEQLEDEILAKDKLVKAKRALE--VELEEVRD----QLEEEEDSRSELEDSKRRL 1732

Query: 191  AL---GFRQCLPQERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETES 247
                   ++    E +  + + EA       +D    Q      K +E+   K+RLE+E+
Sbjct: 1733 TTEVEDIKKKYDAEVEQNTKLDEAKKKLTDDVDTLKKQLEDEKKKLNESERAKKRLESEN 1792

Query: 248  EEGTPVSSTTLQPLKVKKIVPNSARKGKGKKK 279
            E+            K+   V N +R  K +KK
Sbjct: 1793 EDFL---------AKLDAEVKNRSRAEKDRKK 1815


>sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG.
           Length = 128
           
 Score = 29.7 bits (65), Expect = 5.9
 Identities = 14/47 (29%), Positives = 26/47 (54%)

Query: 123 RKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVP 169
           ++L  G NE TK L R   +++++    +P  ++ HL  L   ++VP
Sbjct: 33  KQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVP 79


>sp|P16824|DUT_HCMVA DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (EC 3.6.1.23)
           (DUTPASE) (DUTP PYROPHOSPHATASE).
           Length = 388
           
 Score = 29.7 bits (65), Expect = 5.9
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 157 EHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAILPKV 216
           +H+I LS  R VP      L  S+  P G      + F +CL  +      ++E+ L +V
Sbjct: 124 KHIIWLSRERKVPTS----LGVSLYIPEGF---FGITFYKCLDAQFVCMPELLESRL-QV 175

Query: 217 PPLDVPWLQDTPASIKPDENRG 238
           P LDV  L DT  SI P    G
Sbjct: 176 PQLDVVNLNDTFQSIFPGTIEG 197


>sp|P33308|CSE2_YEAST CHROMOSOME SEGREGATION PROTEIN CSE2.
           Length = 149
           
 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 201 ERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTT 257
           + +V + + + +LP  P LD P  + T       ENR +K  L  +  +     ST+
Sbjct: 4   QNNVLNQIHQILLPTNPTLDKPNAEATKEEFSSAENRDEKDYLTNQQPKNLSTPSTS 60


  Database: swissprot36
    Posted date:  Feb 26, 1999  3:43 PM
  Number of letters in database: 26,840,295
  Number of sequences in database:  74,019
  
Lambda     K      H
   0.316    0.132    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14313385
Number of Sequences: 74019
Number of extensions: 587970
Number of successful extensions: 1721
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 19
length of query: 280
length of database: 26840295
effective HSP length: 52
effective length of query: 228
effective length of database: 22991307
effective search space: 5242017996
effective search space used: 5242017996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)